66 constexpr dna5() noexcept = default;
67 constexpr
dna5(
dna5 const &) noexcept = default;
69 constexpr
dna5 & operator=(
dna5 const &) noexcept = default;
70 constexpr
dna5 & operator=(
dna5 &&) noexcept = default;
71 ~
dna5() noexcept = default;
83 constexpr
dna5(t const & r) noexcept
162inline namespace literals
179constexpr dna5 operator""_dna5(
char const c)
noexcept
198 for (
size_t i = 0; i < n; ++i)
199 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition alphabet_base.hpp:160
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition alphabet_base.hpp:196
constexpr derived_type & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition alphabet_base.hpp:184
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition alphabet_base.hpp:258
The five letter DNA alphabet of A,C,G,T and the unknown character N.
Definition dna5.hpp:48
static constexpr std::array< rank_type, 256 > char_to_rank_table
The lookup table used in char_to_rank.
Definition dna5.hpp:124
constexpr dna5() noexcept=default
Defaulted.
static constexpr rank_type rank_complement_table[alphabet_size]
The rank complement table.
Definition dna5.hpp:94
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition dna5.hpp:109
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition dna5.hpp:91
static constexpr rank_type rank_complement(rank_type const rank)
Returns the complement by rank.
Definition dna5.hpp:103
friend base_t
Befriend seqan3::nucleotide_base.
Definition dna5.hpp:54
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition dna5.hpp:115
friend rna5
Befriend seqan3::rna5 so it can copy char_to_rank.
Definition dna5.hpp:60
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition nucleotide_base.hpp:40
alphabet_base< dna5, size, char > base_t
Type of the base class.
Definition nucleotide_base.hpp:43
The five letter RNA alphabet of A,C,G,U and the unknown character N.
Definition rna5.hpp:46
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition transform.hpp:80
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.