66 constexpr dna15() noexcept = default;
69 constexpr
dna15 & operator=(
dna15 const &) noexcept = default;
70 constexpr
dna15 & operator=(
dna15 &&) noexcept = default;
83 constexpr
dna15(t const & r) noexcept
92 rank_to_char_table[
alphabet_size]{
'A',
'B',
'C',
'D',
'G',
'H',
'K',
'M',
'N',
'R',
'S',
'T',
'V',
'W',
'Y'};
172inline namespace literals
189constexpr dna15 operator""_dna15(
char const c)
noexcept
208 for (
size_t i = 0; i < n; ++i)
209 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition alphabet_base.hpp:160
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition alphabet_base.hpp:196
std::conditional_t< std::same_as< char_t, void >, char, char_t > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition alphabet_base.hpp:69
constexpr derived_type & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition alphabet_base.hpp:184
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition alphabet_base.hpp:258
The 15 letter DNA alphabet, containing all IUPAC smybols minus the gap.
Definition dna15.hpp:48
friend base_t
Befriend seqan3::nucleotide_base.
Definition dna15.hpp:54
static constexpr rank_type rank_complement(rank_type const rank)
Returns the complement by rank.
Definition dna15.hpp:114
friend rna15
Befriend seqan3::rna15 so it can copy char_to_rank.
Definition dna15.hpp:60
constexpr dna15() noexcept=default
Defaulted.
static constexpr rank_type rank_complement_table[alphabet_size]
The rank complement table.
Definition dna15.hpp:95
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition dna15.hpp:126
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition dna15.hpp:92
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition dna15.hpp:120
static constexpr std::array< rank_type, 256 > char_to_rank_table
Returns the rank representation of character.
Definition dna15.hpp:135
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition nucleotide_base.hpp:40
alphabet_base< dna15, size, char > base_t
Type of the base class.
Definition nucleotide_base.hpp:43
The 15 letter RNA alphabet, containing all IUPAC smybols minus the gap.
Definition rna15.hpp:48
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition transform.hpp:80
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.